Journal Publications

  • 2016


    • Quantifying the Impact of Feedstock Quality on the Design of Bioenergy Supply Chain Networks

      K.K. Castillo-Villar, H. Minor-Popocatl, and E. Webb, 2016
      Energies, 9(3), 203
      DOI: 10.3390/en9030203


    • Interence of Network Delays for SUPL3.0 Assisted GNSS

      G. Huang, M.M. Miller, D. Akopian, 2016
      GPS Sollutions
      DOI: 10.1007/s10291-016-0549-6


    • 2D Sudoku associated bijections for image scrambling

      Yue Wu, Yicong Zhou, Sos Agaian, Joseph P Noonan, 2016
      Information Sciences, Vol. 327, pp 91-109, 10


    • Robust control for a class of nonlinear systems with unknown measurement drifts

      W. Zha, C. Qian, J. Zhai, and S. Fei, 2016
      Automatica, Vol. 71, 33 - 37


    • A methodology for the derivation of unloaded abdominal aortic aneurysm geometry with experimental validation

      S.C. Chandra, R. Vimalatharmaiyah, F. Riveros, J.F. Rodriguez, and E.A. Finol, 2016
      Journal of Biomechanical Engineering, Vol. 138, No. 10, 101005
      DOI: 10.1115/1.4034425


    • A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq data

      X. Cui, J. Meng, S. Zhang, Y. Chen, and Y. Huang, 2016
      Bioinformatics 15, 32(12):i378-i385
      DOI: 10.1093/bioinformatics/btw281


    • Adsorption of As (V) to titanium dioxide nanoparticles: effect of particle size, solid concentration and other metals

      Dipendra Wagle and Heather J. Shipley, 2016
      Environmental Engineering and Science, 33. 299-305


    • On the Correlation Structure of Gaussian Copula Models for Geostatistical Count Data

      V. De Oliveira, Z. Han, 2016
      Australian and New Zealand Journal of Statistics, 58, 47-69


    • The Role of Cohesive Zone Properties on Intergranular to Transgranular Fracture Transition in Polycrystalline Solids

      L. Lin, X.Q. Wang, and X. Zeng, 2016
      International Journal of Damage Mechanics
      DOI: 10.1177/1056789515618732


    • Sustained zero-order delivery of GC-1 from a nanochannel membrane device alleviates metabolic syndrome

      C. Filgueira, E. Nicolov, R.L. Hood, A. Ballerini, J. Garcia-Huidobro, J. Lin, D. Fraga, O. Sabek, A. Gaber, K. Phillips, A. Grattoni, 2016
      International Journal of Obesity


    • Reliability and Validity of Two-dimensional Angles in Baseball Pitching Motion

      S. Oyama, R.A. Sosa, R. Campbell, A. Correa, 2016
      Journal of Applied Biomechanics


    • Spines slow down dendritic chloride diffusion and affect short-term ionic plasticity of GABAergic inhibition

      N. Mohapatra, J. Tonnesen, A. Vlachos, T. Kuner, T. Dealers, U.V. Nagerl, F. Santamaria, and P. Jedlicka, 2016
      Scientific Reports 6:23196
      DOI: 10.1038/srep23196


  • 2015


    • NeuroManager: A workflow analysis based simulation management engine for computational neuroscience

      D.B. Stockton, F. Santamaria, 2015
      Frontiers in Neuroinformatics, Vol. 9 (24)
      DOI: 10.3389/fninf.2015.00024


    • Computational Modeling and Simulation of Spall Fracture in Polycrystalline Solids by an Atomistic-Based Interfacial Zone Model

      L. Lin and X. Zeng, 2015
      Engineering Fracture Mechanics, 142, 50-63


    • Coupling between the Output Force and Stiffness in Different Variable Stiffness Actuators

      A, Jafari, 2015
      Journal of Actuators, 3(3), 270-284


    • Predicting Disturbances in Appointment Scheduling through Hybrid Probabilistic Modelling

      A. Alaeddini, Ch. K. Reddy, K. Yang, 2015
      IIE Transactions on Healthcare Systems Engineering, 5.1:14-32
      DOI: 10.1080/19488300.2014.993006


    • Influence of Particle Size and Packaging on Storage Dry Matter Losses for Switchgrass

      T.E. Yu, J.A. Larson, B.C. English, C.N. Boyer, D.D. Tyler, and K.K. Castillo-Villar, 2015
      Biomass and Bioenergy, 73, 135-144
      DOI: 10.1016/j.biombioe.2014.12.009


    • Tensor transform-based quaternion Fourier transform algorithm

      A.M. Grigoryan, S.S. Agaian, 2015
      Information Sciences, Vol. 320, pp. 62-74
      DOI: http://dx.doi.org/10.1016/j.ins.2015.05.018


    • In-vivo strain assessment of the abdominal aortic aneurysm

      A. Satriano, S. Rivolo, E.A. Finol, E.S. Di Martino, 2015
      Journal of Biomechanics, Vol. 48, No. 2, pp. 354-360
      DOI: 10.1016/j.jbiomech.2014.11.016


    • Robust Control for PWM-Based DC-DC Buck Power Converters with Uncertainty via Sampled-Data Output Feedback

      C. Zhang, J. Wang, S. Li, B. Wu, and C. Qian, 2015
      IEEE Trans. on Power Electronics, Vol. 30, No. 1, 504-515


    • Network Delay Modelling for Assisted GPS

      G. Huang, D. Akopian, and C.L. P. Chen, 2015
      IEEE Trans. Aerospace and Electronic Systems, Vol. 51, No.1, pp.52-64


    • Discrete Decision Continuous Actuation control: balance of an inverted pendulum and pumping a pendulum swing

      P.A. Bhounsule, A. Ruina, and Gregg Steisberg, 2015
      ASME Journal of Dynamic Systems, Measurement and Control, 137(5), 051012


    • Wastewater Treatment of a Tanning Facility: Physical and Chemical Treatment

      Jessica George, Ana Ramos, and Heather J. Shipley, 2015
      Journal of Environmental Chemical Engineering, 3. 969-976


    • Haptics-Enabled Surgical Training System with Guidance Using Deep Learning

      E. Biglari, M. Feng, J. Quarles, E. Sako, J. Calhoon, R. Rodriguez, Y. Feng, 2015
      UAHCI 2015, Part III, LNCS, M. Antona and C. Stephnides (Eds), pp267-278
      DOI: 10.1007/978-3-319-20684-4_26


  • 2014


    • Numerical Simulations of Dynamic Fracture Growth based on a Cohesive Zone Model with Microcracks

      L. Lin, R. Dhanawade, and X. Zeng, 2014
      ASCE-Journal of Nanomechanics and Micromechanics


    • TraceRNA: A Web Application for Competing Endogenous RNA Exploration

      M. Flores, Y. Chen, Y. Huang, 2014
      Circ Cardiovasc. Genet, 7(4), 548-57
      DOI: 10.1161/CIRCGENETICS.113.000125


    • A protocol for measuring pull-off stress of wound-treatment polymers

      V.O. Kheyfets, R. Thornton, M. Kowal, E.A. Finol, 2014
      Journal of Biomechanical Engineering, Vol. 136, No. 7, 074501
      DOI: 10.1115/1.4027412


    • Pareto Design of an Adaptive Robust Hybrid of PID and Sliding Control for a Bipod Robot via Genetic Algorithm Optimization

      M. Taherkhorsandi, M.J. Mahmoodabadi, M. Talebipour, K.K. Castillo-Villar, 2014
      Nonlinear Dynamics, 1-13
      DOI: 10.1007/s11071-014-1661-1


    • Facilitating Remote Laboratory Deployments Using Relay Gateway Server Architecture

      A. Melkonyan, A. Gampe, M. Pontual, G. Huang, and D. Akopian, 2014
      IEEE Transactions on Industrial Electronics, Vol 61, No. 1, pp. 477-485


    • Retooling Of Color Imaging In The Quaternion Algebra

      A. Grigoryan, and S. Agaian, 2014
      Applied Mathematics and Sciences: An International Journal (MathSJ), Vol 1, No. 3, Pages: 23-29
      http://airccse.com/mathsj/papers/1314mathsj02.pdf


    • Multivariate Adaptive Approach for Monitoring Simple Linear Profiles (VSSI-T2)

      G. Abdella, K. Yang, A. Alaeddini, 2014
      International Journal of Data Analysis Techniques and Strategies (IJDATS), 6(1), 2-14


    • A New Actuator with Adjustable Stiffness based on a Variable Ratio Lever Mechanism (Aw AS-II)

      A. Jafari, N.G. Tsagarakis, I. Sardellitti, and D.G. Caldwell, 2014
      IEEE/ASME Transaction on Mechatronics, volume 19, issue 1, pp.55-63


    • Thermal fatique as the origin of regolith on small asteroids

      M. Delbo, G. Libourel, J.W. Wilkerson, N. Murdoch, P. Michel, K.T. Ramesh, C. Ganino, C. Verati, S. Marchi, 2014
      Nature, 58:233-236


    • Spatial Statistics

      V. De Oliveira, and A.A. Trindade, 2014
      Encyclopedia of Social Network Analysis and Mining


    • Direct numerical simulation of heat and mass tranfers of spheres in a fluidized bed

      Z-G Feng, S. Musong, 2014
      Powder Technology.262, 62-70


    • A Haptic-Enabled Novel Approach to Cardiovascular Visualization

      S. Yasmin, N. Du, J. Chen, and Y. Feng, 2014
      Computer Animation and Virtual Worlds
      DOI: 10.1002/cav.1586


  • 2013


    • Programmable Hydrogenation of Graphene for Novel Nanocages

      L. Zhang, X. Zeng, X. Wang, 2013
      Scientific Reports, 3(3162)
      DOI: 10.1038/srep031622013


    • Excretion and Toxicity of Gold-Iron Nanoparticles

      J.T. Jenkins, D.L. Halaney, K.V. Sokolov, L.L. Ma, H.J. Shipley, S. Mahajan, R. Asmis, T.E. Milner, K.P. Johnston, M.D. Feldman, 2013
      Nanomedicine: Nanotechnology, Biology, and Medicine. 9,356-365


    • The Role of Mathematical Modeling in Thermal Medicine [editoral]

      G. Shafirstein and Y. Feng, 2013
      Int'l J. Hyperthermia, 29(4): 259-261


    • Gene Regulation, Modulation and Their Applications in Gene Expression Data Analysis

      M. Flores, T-H Hsiao, Y-C Chiu, E.Y. Chuang, Y. Huang, Y. Chen, 13 MAR 2013
      Advanced in Bioinformatics
      DOI: 10.1155/2013/360678


    • Fractional Integration Toolbox

      T. Marinov, N. Rodriguez, F. Santamaria, 2013
      Journal of Fractional Calculus and Analysis, Vol16(3)
      DOI: 10.2478/s13540-013-0042-7


    • Computational hemodynamics of the pulmonary circulation - a focus on pulmonary hypertension

      V.O. Kheyfets, W. O'Dell, T. Smith, J.J. Reilly Jr., E.A. Finol, 2013
      Journal of Biomechanical Engineering, Vol. 135, No. 6, 061011
      DOI: 10.1115/1.4024141


    • The Effect of Individual Representation on the Performance of a Genetic Algorithm applied to a Supply Chain Network Design Problem

      K.K. Castillo-Villar, J.F. Herbert-Acero, 2013
      International Journal of Supply Chain Management, (2)3, 17-24


    • Baseline Building Energy Modeling and Localized Uncertainty Quantification using Gaussian Mixture Models

      A. Srivastav, A. Tewari, and B. Dong, 2013
      Journal of Energy and Building, 65, 438-447


    • An assessment of remote laboratory experiments in radio-communication

      A. Gampe, A. Melkonyan, M. Pontual, G. Huang, and D. Akopian, 2013
      IEEE Trans. on Education
      DOI: 10.1109/TE.2013.2262685


    • An improved image processing technique for asphalt concrete X-ray CT images, Road Materials and Pavement Design

      H.M. Zelelew, A. Almuntashri, S. Agaian and A.T. Papagiannakis, 2013
      Taylor and Francis, Vol. 14, No. 2, 341-359
      http://dx.doi.org/10.1080/14680629.2013.794370


    • Recursive Design of Finite-Time Convergent Observer for a Class of Time-Varying Nonlinear Systems

      H Du, S Li, C J Qian and S Yang, 1 FEB 2013
      Automatica, 49(2), p 601-609.
      http://dx.doi.org/j.automatica.2012.11.036


    • Facilitating Remote Laboratory Deployments Using a Relay Gateway Server Architecture.

      A Melkonyan, A Gampe, M Pontual, G Huang and D Akopian., 24 JAN 2013
      IEEE Transactions on Industrial Electronics, PP(99), p 1.
      http://dx.doi.org/10.1109/TIE.2013.2242416


    • Heat and Mass Transfer in Particulate Suspensions (Book)

      E E Michaelides, 2013

      ISBN 9781461458548


  • 2012


    • Development of a Localized Probabilistic Sensitivity Method to Determine Random Variable Regional Importance.

      H R Millwater, G Singh and M Cortina., 1 NOV 2012
      Reliability Engineering and System Safety, 107, p 3-15.
      http://dx.doi.org/10.1016/j.ress.2011.04.003


    • In Situ Mechanical Behavior of Mineral Crystals in Human Cortical Bone Under Compressive Load Using Synchrotron X-ray Scattering Techniques.

      B Giri, J Almer, X N Dong and X Wang., 14 OCT 2012
      Journal of Mechanical Behavior of Biomedical Materials, 14, p 101-112.
      http://dx.doi.org/10.1016/j.jmbbm.2012.05.003


    • Global Control of Nonlinear Systems with Uncertain Output Function Using Homogeneous Domination Approach.

      J Zhai and C J Qian., 25 SEP 2012
      International Journal of Robust and Nonlinear Control, 22(14), p 1543-1561.
      http://dx.doi.org/10.1002/rnc.1765


    • A Semi-Global Finite-Time Convergent Observer for a Class of Nonlinear Systems with Bounded Trajectories.

      W Tian, H Du and C J Qian., 1 AUG 2012
      Nonlinear Analysis Real World Applications, 13(4), p 1827-1836.
      http://dx.doi.org/10.1016/j.nonrwa.2011.12.021


    • Semi-Global Finite-Time Stabilization via Output Feedback of Planar Nonlinear Systems with Application to MPPT in Photovoltaic Systems.

      R Jia, M Lamshidi and C J Qian., 1 AUG 2012
      International Journal of Automation and Control, 6(2), p 140-156.
      http://dx.doi.org/10.1504/ijaac.2012.048646


    • 2D Weight Function Development using a Complex Taylor Series Expansion Method.

      D Wagner and H R Millwater., 1 MAY 2012
      Engineering Fracture Mechanics, 86, p 23-37.
      http://dx.doi.org/10.1016/j.engfracmech.2012.02.006


    • A Genuine Nonlinear Approach for Controller Design of a Boiler-Turbine System.

      S Yang, H Du and C J Qian., 1 MAY 2012
      ISA Transactions, 53(3), p 446-453.
      http://dx.doi.org/10.1016/j.isatra.2011.12.001


    • Color Image Enhancement Based on the Discrete Cosine Transform Coefficient Histogram.

      K Panetta J Xia and S Agaian., 1 MAY 2012
      SPIE Journal of Electronic Imaging, 21(2), p 021117.
      http://dx.doi.org/10.1117/1.jei.21.2.021117


    • Bayesian Model Selection in Spatial Lattice Models.

      J Song and V De Oliveira., 1 MAR 2012
      Statistical Methodology, 9(1-2), p 228-238.
      http://dx.doi.org/10.1016/j.stamet.2011.01.003


    • Bayesian Analysis of Conditional Autoregressive Models.

      V De Oliveira., 1 FEB 2012
      Annals of the Institute of Statistical Mathematics, 64(1), p 107-133.
      http://dx.doi.org/10.1007/s10463-010-0298-1


    • Semi-Global Output Feedback Stabilisation of Uncertain Non-Linear Systems by Homogeneous Output Feedback Controllers.

      R Jia, J Zhai and C J Qian., 5 JAN 2012
      IET Control Theory and Applications, 6(1), p 165-172.
      http://dx.doi.org/10.1049/iet-cta.2010.0503


    • Simulation-Based Crack Growth Mitigation Through Optimum Laser Peened Residual Stress.

      G Singh, J Ocampo, A Clauer and H R Millwater., 1 JAN 2012
      International Journal of Structural Integrity, 3(3), p 236-259.
      http://dx.doi.org/10.1108/17579861211264361


  • 2011


    • Numerical Simulation of Three-Dimensional Gas-Solid Particle Flow in a Horizontal Pipe.

      A Kartushinski, E E Michaelides, Y Rudi, S Tisler and I Shcheglov., 1 NOV 2011
      AIChE Journal, 57(11), p 2977-2988.
      http://dx.doi.org/10.1002/aic.12528


    • Effect of Mineral-Collagen Interfacial Behavior on the Microdamage Progression in Bone using a Probabilistic Cohesive Finite Element Model.

      Q Luo, R Nakade, X Dong, Q Rong, and X Wang., 1 OCT 2011
      Journal of the Mechanical Behavior of Biomedical Materials, 4(7), p 943-952.
      http://dx.doi.org/10.1016/j.jmbbm.2011.02.003


    • Maximum Likelihood and Restricted Maximum Likelihood Inference for a Class of Gaussian Markok Random Fields.

      V De Oliveira and M Ferreira., 1 SEP 2011
      Mertika, 74(2), p 167-183.
      http://dx.doi.org/10.1007/s00184-009-0295-7


    • Probabilistic Sensitivity Analysis with Respect to Bounds of Truncated Distributions.

      H R Millwater and Y Feng., 15 JUN 2011
      ASME Journal of Mechanical Design, 133(6), p 061001.
      http://dx.doi.org/10.1115/1.4003819


    • Real-Time Predictive Surgical Control for Cancer Treatment Using Laser Ablation [Life Science].

      D. Fuentes and Y. Feng., 1 MAY 2011
      IEEE Signal Processing Magazine, 28(3), p 134-138.
      http://dx.doi.org/10.1109/MSP.2011.940419


    • Game-Theoretic Static Load Balancing for Distributed Systems.

      S Penmatsa and A T Chronopoulos., 1 APR 2011
      Journal of Parallel and Distributed Computing, 71(4), p 537-555.
      http://dx.doi.org/10.1016/j.jpdc.2010.11.016


    • Multi-Resolution Decomposition Schemes Using the Parameterized Logarithmic Image Processing Model with Application to Image Fusion.

      S Nercessian, K Panetta and S Agaian., 1 JAN 2011
      EURASIP Journal on Advances in Signal Processing, 2011, Article 1.
      http://dx.doi.org/10.1155/2011/515084


    • Statistical Performance Analysis of the MUSIC Algorithm in Angular Sectors.

      A Bassias and A T Chronopoulos., 1 JAN 2011
      Journal of Signal Processing, 15(1), p 37-46.
      http://www.cs.utsa.edu/faculty/atc/pub/J47.pdf


    • Global Stabilization of a Class of Upper-Triangular Systems with Unbounded or Uncontrollable Linearizations.

      S Ding, S Li and Q Li and C J Qian., 2011
      International Journal of Robust and Nonlinear Control, 21(3), p 271-294.
      http://dx.doi.org/10.1002/rnc.1591


    • Model-based Planning and Real-Time Predictive Control for Laser-Induced Thermal Therapy.

      D Fuentes and Y Feng., 2011
      International Journal of Hyperthermia, 27(8), p 751-761.
      http://dx.doi.org/10.3109/02656736.2011.611962


    • A Numerical Solution Method for Initial-Value Problems Using Harmonic Analysis and Taylor Series Approximations.

      R Bagley and Y Feng., 2011
      IAENG International Journal of Applied Mathematics, 24(6), p 841-860.
      ISSN 1992-9986


  • 2010


    • Studying the Impact of Synchronization Frequency on Scheduling Tasks with Dependencies on Heterogeneous Systems.

      T Andronikos, F Ciorba, I Riakiotakis, G Papakonstantinou and A T Chronopoulos., 1 DEC 2010
      Performance Evaluation, 67(12), p 1324-1339.
      http://dx.doi.org/10.1016/j.peva.2010.08.020


    • Global Finite-Time Stabilisation by Output Feedback for a Class of Uncertain Nonlinear Systems.

      J Li, C J Qian and S Ding., 1 NOV 2010
      International Journal of Control, 83(11), p 2241-2252.
      http://dx.doi.org/10.1080/00207179.2010.511658


    • Fiber Bragg Grating Sensor for Fault Detection in Radial and Network Transmission Lines.

      A Moghadas and M Shadaram., 20 OCT 2010
      Sensors, 10(10), p 9407-9423.
      http://dx.doi.org/10.3390/s101009407


    • Complex Variable Methods for Shape Sensitivity of Finite Element Models.

      A Voorhees, H R Millwater and R L Bagley., 1 OCT 2010
      Finite Element Analysis and Design, 47(10), p 1146-1156.
      http://dx.doi.org/10.1016/j.finel.2011.05.003


    • Measurement and Mathematical Modeling of Thermally Induced Injury and Heat Shock Protein Expression Kinetics in Normal and Cancerous Prostate Cells.

      M N Rylander, Y Feng, K Zimmermann and K Diller., 21 SEP 2010
      International Journal of Hyperthermia, 26(8), p 748-764.
      http://dx.doi.org/10.3109/02656736.2010.486778


    • Random Field Assessment of Nanoscopic Inhomogeneity of Bone.

      X N Dong, Q Luo, D Sparkman, H R Millwater and X Wang., 15 SEP 2010
      Bone, 47(6), p 1080-1084.
      http://dx.doi.org/10.1016/j.bone.2010.08.021


    • Off-Highway Heavy-Duty Truck Under-Hood Thermal Analysis.

      S Mao, Z-G Feng and E E Michaelides., 1 SEP 2010
      Applied Thermal Engineering, 30(13), 1726-1733.
      http://dx.doi.org/10.1016/j.applthermaleng.2010.04.002


    • Cholesterol Homeostasis Markers are Localized to Mouse Hippocampal Pyramidal and Granule Layers.

      C Valdez, M Smith, G Perry, C Phelix and F Santamaria., 1 AUG 2010
      Hippocampus, 20(8), P 902-905.
      http://dx.doi.org/10.1002/hipo.20743


    • Adaptive Real-Time Bioheat Transfer Models for Computer Driven MR-Guided Laser Induced Thermal Therapy.

      Y Feng, A Elliott, A Shetty, R McNichols, J T Oden and R Stafford., 5 MAY 2010
      IEEE Transactions on Biomedical Engineering, 57(5), p 1024-1030.
      http://dx.doi.org/10.1109/TBME.2009.2037733


    • Fast Convergent Observer Design for Output Feedback Stabilisation of a Planar Vertical Takeoff and Landing Aircraft.

      M T Frye, S Ding, C J Qian and S Li., 8 APR 2010
      IET Control Theory and Applications, 4(4), p 690-700.
      http://dx.doi.org/10.1049/iet-cta.2009.0158


    • Dendritic Excitability Modulates Dendritic Information Processing in a Purkinje Cell Mode.

      A Coop, H Cornelius and F Santamaria., 30 MAR 2010
      Frontiers in Computational Neuroscience, 4, p 6.
      http://dx.doi.org/10.3389/fncom.2010.00006


    • 13.3 Objective Bayesian Analysis for Gaussian Random Fields (Book Chapter).

      V De Oliveira., 2010
      In Frontiers of Statistical Decision Making and Bayesian Analysis—In Honor of James O Berger, p 497-511.
      ISBN 9781441969446


    • Development of a Localized Probabilistic Sensitivity Method to Determine Random Variable Regional Importance.

      H R Millwater and G Singh., 2010
      Procedia - Social and Behavioral Sciences, 2(6), p 7710-7711.
      http://dx.doi.org/10.1016/j.sbspro.2010.05.191


    • Quantifying the Effects of Elastic Collisions and Non-Covalent Binding on Glutamate Receptor Trafficking in the Post-Synaptic Density.

      F Santamaria, J Gonzalez, S Raghavachari and G Augustine., 2010
      PLoS Computational Biology, 6, p e1000780.
      http://dx.doi.org/10.1371/journal.pcbi.1000780


  • 2009


    • Nanoshell-Mediated Laser Surgery Simulation for Prostate Cancer Treatment.

      Y Feng, D Fuentes, A Hawkins, J Bass, M N Rylander, A Elliott, A Shetty, R J Stafford and J T Oden., 1 JAN 2009
      Engineering with Computers, 25(1), p 3-13.
      http://dx.doi.org/10.1007/s00366-008-0109-y